- Organizational Structure of the University
- Units directly governed by the Rector
- Rector's Secretariat
- University Business Activity and Service Centre
- Centre of Communication and Public Relations
- Bratislava Business School
- Department for Personnel and Social Questions
- Znalecký ústav
- Archive
- Health, Section Safety and Security at Work
- Section of Civil Defence
- Centre of Drugs Prevention and Counselling
- Legal Services and Internal Control Department
- Units directly governed by the Bursar
- Units governed by the Vice-Rector for Education
- Units governed by the Vice-Rector for Development
- Units governed by the Vice-Rector for Research and Doctoral Studies
- Units governed by the Vice-Rector for International Relations
- Units governed by the Vice-Rector for Management of Academic Projects